CDS

Accession Number TCMCG065C17757
gbkey CDS
Protein Id XP_004968861.1
Location complement(join(23492900..23493769,23495091..23497856))
Gene LOC101778544
GeneID 101778544
Organism Setaria italica

Protein

Length 1211aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA207554
db_source XM_004968804.4
Definition probable RNA-dependent RNA polymerase SHL2 [Setaria italica]

EGGNOG-MAPPER Annotation

COG_category H
Description Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
KEGG_ko ko:K11699        [VIEW IN KEGG]
EC 2.7.7.48        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0001172        [VIEW IN EMBL-EBI]
GO:0002252        [VIEW IN EMBL-EBI]
GO:0002376        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003968        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0006955        [VIEW IN EMBL-EBI]
GO:0007154        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008037        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009615        [VIEW IN EMBL-EBI]
GO:0009616        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009856        [VIEW IN EMBL-EBI]
GO:0009875        [VIEW IN EMBL-EBI]
GO:0009888        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009908        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010073        [VIEW IN EMBL-EBI]
GO:0010074        [VIEW IN EMBL-EBI]
GO:0010267        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010492        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016246        [VIEW IN EMBL-EBI]
GO:0016441        [VIEW IN EMBL-EBI]
GO:0016458        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016772        [VIEW IN EMBL-EBI]
GO:0016779        [VIEW IN EMBL-EBI]
GO:0018130        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019438        [VIEW IN EMBL-EBI]
GO:0019827        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0030422        [VIEW IN EMBL-EBI]
GO:0031047        [VIEW IN EMBL-EBI]
GO:0031050        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032774        [VIEW IN EMBL-EBI]
GO:0034062        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034654        [VIEW IN EMBL-EBI]
GO:0035194        [VIEW IN EMBL-EBI]
GO:0035821        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043331        [VIEW IN EMBL-EBI]
GO:0044003        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044403        [VIEW IN EMBL-EBI]
GO:0044419        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044706        [VIEW IN EMBL-EBI]
GO:0045087        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048366        [VIEW IN EMBL-EBI]
GO:0048367        [VIEW IN EMBL-EBI]
GO:0048437        [VIEW IN EMBL-EBI]
GO:0048438        [VIEW IN EMBL-EBI]
GO:0048440        [VIEW IN EMBL-EBI]
GO:0048467        [VIEW IN EMBL-EBI]
GO:0048507        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048544        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048827        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051607        [VIEW IN EMBL-EBI]
GO:0051701        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0051817        [VIEW IN EMBL-EBI]
GO:0052018        [VIEW IN EMBL-EBI]
GO:0052249        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0070918        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071359        [VIEW IN EMBL-EBI]
GO:0071407        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090567        [VIEW IN EMBL-EBI]
GO:0097659        [VIEW IN EMBL-EBI]
GO:0097747        [VIEW IN EMBL-EBI]
GO:0098542        [VIEW IN EMBL-EBI]
GO:0098586        [VIEW IN EMBL-EBI]
GO:0098727        [VIEW IN EMBL-EBI]
GO:0099402        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1901698        [VIEW IN EMBL-EBI]
GO:1901699        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGGATCGCTGCGGGGCGCGGCCGCCCCGCCACCGGCGCCGCGCGCGGGCGACCTGGTGATCACGCAGGTCAGCCTGGGCGGCTTCGACGCCACCGTCACGGCGCGCGACCTCGCCGACTTCCTCGAATCCGAGGTGGGCCAGGTTTGGCGATGCCGCGTCAAGACCTCCTGGACTCCGCCGGACGCCTACCCCGACTTCCTCCTCCCCGCGGTCACCCCCGCCGCCGGCGCCGCCGGGCAGCCGCCGCAGTACGACCGCGTGCCCCCGCACGCCTTCGTTCACTTCGCGCGCCCGGAGGCCGCGCGCCGCGCCGCCGACGCCGCGGGGCGGTCGGAGCTCATCCTCGGCCGGAAGCCCCTCCGGGCCGCCTCCGCCCCGGACAGCTCCATCCGCGCCTCCCGCCGCCGCAATGTCAAGCCATTCCGTTTCACCGACTCGCGGCTCGAGGTCGGGGATCTCCCGGCCCCCGACTCCTTCTTCGCCGCCTGGCGCGGGCCGGACGCCGGGCTCGAGTTCTCCGTCGACCCCTTCGACGGGACCTGCCGGTTCGTCTTTACCCGCGACACCGCCTTCGCGTATCAGGAGTACCGCCAGGCCGCCGTGGTTATGCGCTGCGACATCAAGCTCGAGTTCCCCGTCCGCGACGTCGCAGAGGTCAGGACGTTCCAGCTCGACAGCTCGCTGCTGCTCCGGTTGTCCTCCACGCCTCTCGTCTTCTACCGCACGGCGGATGATGACATCCACGAGTCCGTGCCGTTCGACCTTCTCGACGATGACGACCCGTGGATACGGACCACCGACATCACCCCCAGCGGCGCAATCGGGCGATGCGGGGTGTACAGGGTCACATTCCCGAGGCGGTTCTGGCCAAAGATGGAACACGCGCTGGCGTACATGAGGGAGAGGAGGGTGGAAATCGTGGAGTGTGGTGGCGGGTGGGGATCAAGGCGGGGGCTCTCGGTGCGTGATGAGCCTGAATTTGGGGAGCGAATGCAGGACTTATTCTTCTGCATGCAGCACGCGGAGGGGCTCAAATTTCCGGTGCTGTTTCTCGTGAATGCGCTGGTGCACAAGGGAGTGATAACTCAACACCACCTCACGCCTGAGTTCTTTGGTTTGCTCCAGAGAAGAGAGGATGAGGTGAACGTGGCTGCATTGAGAGAATTTTGGGGGGACAAATTTCCAGTGTTTGATGCATGTCGGAGGCTGAAGAATCTGCAGGATAGGGTTGCCAGGAACCCCAAACTTCTTCGCAACAAGATTGGGCATGAAAACTCAGAAGTGAGGAGGCTGGTGATCACACCCACCAGGGCTTATTGTCTGCCACCAGAAGTGGAGCGCTCTAACCGTGTTATCAGGCATTATCGTGAAGTGGCTGACAGGTTCTTGAGGGTAACTTTTATGGATGAGGGGATGCAGCAACTGAATAGTAATGTGCTGAATTTCTCTGCAGCGCAAATCGTCAAGGATTTGATGTCAAACTCATTCCAGCATAAGACAACAGTGTACAAGCGTGTTAAAACGTTTTTGACAGAGGGTTTTCACATGTGCGGCAGGAAGTACTCATTTCTTGCATTTTCATCGAACCAGCTGAGGGATAGGTCGGCTTGGTTCTTCGCAGAGGACAGAACAAGAACAGTAGAAAGCATAAGGAAATGGATGGGGCGGTTCACAAGTAAGAATGTAGCAAAGCATGCTGCTCGGATGGGGCAGTGCTTCTCATCTACATATGCAACGGTAGTGATGCAGCCAGATGAGGTCAATGAGTGTCTTGAGGATGTTGAACGCAATGGGTATGTTTTCTCTGATGGAATTGGCAAGATTACGCCAGACCTTGCAATGGAAGTTGCTAAGACGCTGCAACTGACAGATAATCCCCCATCCGCTTACCAGATTAGGTATGCAGGGTTCAAGGGCGTTATAGCTGTCTGGCAAGGAGAAAATGATGGTATACGACTTTCCCTGAGGCCAAGCATGCACAAGTTTGAGTCTACCCACACTGTGTTAGAGGTGGTCTCATGGACAAAGTTTCAGCCAGGATTCTTAAACCGCCAGATTATTACATTACTGTCCTCCTTGAATGTCCCGGATGCTATCTTTTCACAAATGCAGGAAGCCATGCTATCTAATCTCAACAATATTTTGTCGGACACTGATGTCGCTTTTGATGTTGTAACCACCTCTTGTGCTGAGCAAGGAAACACCGCGGCACTGATGTTGAGTGCTGGCTTTTCACCTGGAACTGAACCGCACCTGAAAGCAATGCTCTTGGCTATAAGGTCTTCACAGCTATTGGGTCTTTTGGAGAAAACAAGGATTTTTGTGCCAAAGGGAAGGTGGTTGATGGGCTGCCTTGATGAACTTGGGATCCTTGAACAGGGGCAATGCTTTATTCAGGCCTCCTCTCCAATGCTCAATAATTTTCTGGTGAAGCACGGACCAAAATGTTCCTCAGCAAACAAAAATGCAGAGACCATTGTTGGTACTGTTGTAATGGCAAAGAACCCGTGCCTTCATCCAGGGGATGTCCGGATCCTTGAAGCTGTTGATGTGCCTGAACTGCATCACCTTGTTGATTGCTTGGTCTTCCCAAAGAAAGGTGAGAGGCCACACGCCAATGAAGCATCTGGGAGTGATCTTGATGGGGATCTCTACTTTGTGACATGGGATGAAAAGCTTATACCGCCAGGCAAAAAGAGCTGGAACCCTATGGACTACACCCCAGCTGAAGCAAAACAGCTGCCACGCCAAGTATCTCAACATGATATTGTTGATTTCTTCTTGAAGAACATGGTAAATGAGAAACTTGGTCCAATAAGCAATGCTCATGTTGTTCATGCTGACACAAGTGAGTATGGAGCAATGGACGAGAAGTGCATTCAGTTGGCAGAGCTAGCAGCAACTGCTGTGGACTTCCCCAAGACAGGCAAAATTGTGTCAATGCCGCCATCCCTTCGACCAAAATTATATCCCGACTTTATGCAAAAGGATGAGGCGATCACCTATAAATCAGATAAGATCCTTGGAAGGCTTTATCGGTCAATCCAAGAAGCCTCCAGCAGTGATCTGGTTCCAGAAGAAACTTGCACTTTAAATGATCTTCCATATGACACAGATATGGAAGTTCCTGGTGCGACAGATTTTCTCTCAAGTGCTTGGCTGTGCAAGTGCTCATATGAAGCGCAGCTGAATGCACTGCTCAATCAATACGGTGTCCGTACTGAAGCAGAGCTTGTGACGGAGCACATATGGTCGCTTCCCAAATACAGTAGCAGGAAGCAGGGGGATATAAAGGAGAGGTTGAAGAACTCATACTCTGCTCTCCGGAAGGAGCTCCGTAGTACTTTTGAAAGCATTGAGACAGACGAAACTGAGATATCTGAGGATGAGAAAAATCGGGTGTATGAGATGAAGGCCTCCGCATGGTACCAGGTTACCTACCACCCCAAATGGGTCCAGAAGTCAAGGGAAATGCTTGGGCCAGACTGCGAGGAAATGCCGGCGCGGCTCAGCTTTGCATGGATCGCAGTGGATTACCTGGCGCGGATAAAGATAAGGTGCCAAGGAGAAGTGAGGTCCAACAGCCAAAGACCTGTCGAGAGACTTGCTGCCTACATTTCTGAGAGCATGTAG
Protein:  
MGSLRGAAAPPPAPRAGDLVITQVSLGGFDATVTARDLADFLESEVGQVWRCRVKTSWTPPDAYPDFLLPAVTPAAGAAGQPPQYDRVPPHAFVHFARPEAARRAADAAGRSELILGRKPLRAASAPDSSIRASRRRNVKPFRFTDSRLEVGDLPAPDSFFAAWRGPDAGLEFSVDPFDGTCRFVFTRDTAFAYQEYRQAAVVMRCDIKLEFPVRDVAEVRTFQLDSSLLLRLSSTPLVFYRTADDDIHESVPFDLLDDDDPWIRTTDITPSGAIGRCGVYRVTFPRRFWPKMEHALAYMRERRVEIVECGGGWGSRRGLSVRDEPEFGERMQDLFFCMQHAEGLKFPVLFLVNALVHKGVITQHHLTPEFFGLLQRREDEVNVAALREFWGDKFPVFDACRRLKNLQDRVARNPKLLRNKIGHENSEVRRLVITPTRAYCLPPEVERSNRVIRHYREVADRFLRVTFMDEGMQQLNSNVLNFSAAQIVKDLMSNSFQHKTTVYKRVKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDRTRTVESIRKWMGRFTSKNVAKHAARMGQCFSSTYATVVMQPDEVNECLEDVERNGYVFSDGIGKITPDLAMEVAKTLQLTDNPPSAYQIRYAGFKGVIAVWQGENDGIRLSLRPSMHKFESTHTVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFSQMQEAMLSNLNNILSDTDVAFDVVTTSCAEQGNTAALMLSAGFSPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGRWLMGCLDELGILEQGQCFIQASSPMLNNFLVKHGPKCSSANKNAETIVGTVVMAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPKKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYTPAEAKQLPRQVSQHDIVDFFLKNMVNEKLGPISNAHVVHADTSEYGAMDEKCIQLAELAATAVDFPKTGKIVSMPPSLRPKLYPDFMQKDEAITYKSDKILGRLYRSIQEASSSDLVPEETCTLNDLPYDTDMEVPGATDFLSSAWLCKCSYEAQLNALLNQYGVRTEAELVTEHIWSLPKYSSRKQGDIKERLKNSYSALRKELRSTFESIETDETEISEDEKNRVYEMKASAWYQVTYHPKWVQKSREMLGPDCEEMPARLSFAWIAVDYLARIKIRCQGEVRSNSQRPVERLAAYISESM